Version 0.3.0 (build 2010-05-04) (changes compared to version 0.2.5) * USER-VISIBLE CHANGES TO EXISTING FUNCTIONS: ------------------------ * Changed behaviour of pmp.bma (see help(pmp.bma)) * NEW FEATURES: ------------------------ * bms now can hold a set of fixed regressors (argument fixed.reg) * New functions pred.density, plot.pred.density, print.pred.density, predict.bma, predict.zlm * New functions quantile.density, quantile.pred.density, qunatile.coef.density * New function pmpmodel * New functions post.var and post.pr2 * New functions model.frame.bma, model.frame.zlm, deviance.bma, deviance.zlm, variable.names.bma, variable.names.zlm, logLik.zlm, vcov.zlm * bms can now accomodate user-defined coefficient (g) nand model-priors, as well as samplers * BUG FIXES: ------------------------ * bms: + bug with accept.candi = NA fixed + problems with environment in non-standard settings fixed (in internal function .construct.arglist) + mprior =="custompip" is now working properly (fixed in internal function .mprior.pip.init) + fixed problem with sys.call in non-standard calling environments + * plotComp: +also works for single bma object now + fixed display when variable names are too long + fixed many problems with graphical parametrs - completely redone * topmod: + bug when likelihood==-Inf, fixed (in internal function .top10) + initializing with bbeta==FALSE now works properly (fixed in .top10) * density.bma: bug with par and plot.new fixed when argumnet addons contains "p" * image.bma: fixed display problems when variable names too long * plotConv (resp. plot.bma): fixed warning 'In min(x) : no non-missing arguments to min; returning Inf' * plotModelsize: + bugfixes for parameter ksubset + bugfixes for graphical paramters + can now cope with case when model prior is not available * CHANGES TO INTERNAL OBJECTS: ------------------------------ * New classes: gprior, mprior, pred.density, implicit class coef.density * Streamling and customizability of gprior required changes to following functions: bms, zlm, .choose.gprior, gdensity, .topmod.as.bbetaT New functions gprior.constantg.init, gprior.eblocal.init and .gprior.hyperg.init now provide for generic handling of g-priors Old functions lprob.*.init are still available for compatibility * Streamling and customizability of mprior required changes to following functions: .choose.mprior, and all .mprior.*.init functions * Streamling and customizability of sampling functions led to streamlining of: .iterenum, .fls.samp, .rev.jump, .enum_startend * Introduction of bms argument fixed.reg is handled generically by functions .fixedset.mprior, .fixedset.sampler, .starter, .choose.mprior, bms * Speeding-up of syntax (replacing $ with [[, directly calling internal functions) yields 5% speed gain in bms vs version 0.2.5 * .construct.arglist has been vastly changed ############################################################### Version 0.2.5 (build 2010-07-30) * NEW FEATURES ------------ None * BUG FIXES --------- * fixed a bug affecting coefficient appearing